Release_log¶
v1.0.0 - Jan 10th 2022¶
Dependencies of FuSViz, R session info
sessionInfo():R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 10.16 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] FuSViz_1.0.0 loaded via a namespace (and not attached): [1] ProtGenerics_1.24.0 bitops_1.0-7 [3] matrixStats_0.61.0 bit64_4.0.5 [5] filelock_1.0.2 RColorBrewer_1.1-2 [7] progress_1.2.2 httr_1.4.2 [9] GenomeInfoDb_1.28.4 backports_1.4.1 [11] tools_4.1.0 utf8_1.2.2 [13] R6_2.5.1 rpart_4.1-15 [15] lazyeval_0.2.2 Hmisc_4.6-0 [17] DBI_1.1.2 BiocGenerics_0.38.0 [19] Gviz_1.36.2 colorspace_2.0-2 [21] nnet_7.3-16 gridExtra_2.3 [23] tidyselect_1.1.1 prettyunits_1.1.1 [25] bit_4.0.4 curl_4.3.2 [27] compiler_4.1.0 cli_3.1.1 [29] Biobase_2.52.0 htmlTable_2.4.0 [31] xml2_1.3.3 DelayedArray_0.18.0 [33] rtracklayer_1.52.1 checkmate_2.0.0 [35] scales_1.1.1 rappdirs_0.3.3 [37] stringr_1.4.0 digest_0.6.29 [39] Rsamtools_2.8.0 foreign_0.8-81 [41] XVector_0.32.0 dichromat_2.0-0 [43] base64enc_0.1-3 jpeg_0.1-9 [45] pkgconfig_2.0.3 htmltools_0.5.2 [47] MatrixGenerics_1.4.3 ensembldb_2.16.4 [49] dbplyr_2.1.1 fastmap_1.1.0 [51] BSgenome_1.60.0 htmlwidgets_1.5.4 [53] rlang_1.0.0 rstudioapi_0.13 [55] RSQLite_2.2.9 BiocIO_1.2.0 [57] generics_0.1.1 jsonlite_1.7.3 [59] BiocParallel_1.26.2 dplyr_1.0.7 [61] VariantAnnotation_1.38.0 RCurl_1.98-1.5 [63] magrittr_2.0.2 GenomeInfoDbData_1.2.6 [65] Formula_1.2-4 Matrix_1.3-3 [67] Rcpp_1.0.8 munsell_0.5.0 [69] S4Vectors_0.30.2 fansi_1.0.2 [71] lifecycle_1.0.1 stringi_1.7.6 [73] yaml_2.2.2 SummarizedExperiment_1.22.0 [75] zlibbioc_1.38.0 BiocFileCache_2.0.0 [77] blob_1.2.2 parallel_4.1.0 [79] crayon_1.4.2 lattice_0.20-44 [81] Biostrings_2.60.2 splines_4.1.0 [83] GenomicFeatures_1.44.2 hms_1.1.1 [85] KEGGREST_1.32.0 knitr_1.37 [87] pillar_1.6.5 GenomicRanges_1.44.0 [89] rjson_0.2.21 biomaRt_2.48.3 [91] stats4_4.1.0 XML_3.99-0.8 [93] glue_1.6.1 biovizBase_1.40.0 [95] latticeExtra_0.6-29 data.table_1.14.2 [97] png_0.1-7 vctrs_0.3.8 [99] gtable_0.3.0 purrr_0.3.4 [101] assertthat_0.2.1 cachem_1.0.6 [103] ggplot2_3.3.5 xfun_0.29 [105] AnnotationFilter_1.16.0 restfulr_0.0.13 [107] survival_3.2-11 tibble_3.1.6 [109] GenomicAlignments_1.28.0 AnnotationDbi_1.54.1 [111] memoise_2.0.1 IRanges_2.26.0 [113] cluster_2.1.2 ellipsis_0.3.2
v1.4.0 - Jun 10th 2023¶
Dependencies of FuSViz, R session info
sessionInfo():R version 4.3.0 (2023-04-21) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Ventura 13.4 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0 locale: [1] C/UTF-8/C/C/C/C time zone: Europe/Oslo tzcode source: internal attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] FuSViz_1.4.0 loaded via a namespace (and not attached): [1] DBI_1.2.1 bitops_1.0-7 [3] deldir_2.0-2 gridExtra_2.3 [5] biomaRt_2.58.2 rlang_1.1.3 [7] magrittr_2.0.3 biovizBase_1.50.0 [9] matrixStats_1.2.0 compiler_4.3.0 [11] RSQLite_2.3.5 GenomicFeatures_1.54.3 [13] png_0.1-8 vctrs_0.6.5 [15] ProtGenerics_1.34.0 stringr_1.5.1 [17] pkgconfig_2.0.3 crayon_1.5.2 [19] fastmap_1.1.1 backports_1.4.1 [21] dbplyr_2.4.0 XVector_0.42.0 [23] utf8_1.2.4 Rsamtools_2.18.0 [25] rmarkdown_2.25 bit_4.0.5 [27] xfun_0.42 zlibbioc_1.48.0 [29] cachem_1.0.8 GenomeInfoDb_1.38.5 [31] jsonlite_1.8.8 progress_1.2.3 [33] blob_1.2.4 DelayedArray_0.28.0 [35] BiocParallel_1.36.0 jpeg_0.1-10 [37] parallel_4.3.0 prettyunits_1.2.0 [39] cluster_2.1.6 VariantAnnotation_1.48.1 [41] R6_2.5.1 stringi_1.8.3 [43] RColorBrewer_1.1-3 rtracklayer_1.62.0 [45] rpart_4.1.23 Gviz_1.46.1 [47] GenomicRanges_1.54.1 Rcpp_1.0.12 [49] SummarizedExperiment_1.32.0 knitr_1.45 [51] base64enc_0.1-3 IRanges_2.36.0 [53] Matrix_1.6-5 nnet_7.3-19 [55] tidyselect_1.2.0 dichromat_2.0-0.1 [57] rstudioapi_0.15.0 abind_1.4-5 [59] yaml_2.3.8 codetools_0.2-19 [61] curl_5.2.0 lattice_0.22-5 [63] tibble_3.2.1 Biobase_2.62.0 [65] KEGGREST_1.42.0 evaluate_0.23 [67] foreign_0.8-86 BiocFileCache_2.10.1 [69] xml2_1.3.6 Biostrings_2.70.2 [71] pillar_1.9.0 filelock_1.0.3 [73] MatrixGenerics_1.14.0 checkmate_2.3.1 [75] stats4_4.3.0 generics_0.1.3 [77] RCurl_1.98-1.14 ensembldb_2.26.0 [79] S4Vectors_0.40.2 hms_1.1.3 [81] ggplot2_3.4.4 munsell_0.5.0 [83] scales_1.3.0 glue_1.7.0 [85] lazyeval_0.2.2 Hmisc_5.1-1 [87] tools_4.3.0 interp_1.1-6 [89] BiocIO_1.12.0 data.table_1.15.0 [91] BSgenome_1.70.1 GenomicAlignments_1.38.2 [93] XML_3.99-0.16.1 latticeExtra_0.6-30 [95] AnnotationDbi_1.64.1 colorspace_2.1-0 [97] GenomeInfoDbData_1.2.11 htmlTable_2.4.2 [99] restfulr_0.0.15 Formula_1.2-5 [101] cli_3.6.2 rappdirs_0.3.3 [103] fansi_1.0.6 S4Arrays_1.2.0 [105] dplyr_1.1.4 AnnotationFilter_1.26.0 [107] gtable_0.3.4 digest_0.6.34 [109] BiocGenerics_0.48.1 SparseArray_1.2.3 [111] rjson_0.2.21 htmlwidgets_1.6.4 [113] memoise_2.0.1 htmltools_0.5.7 [115] lifecycle_1.0.4 httr_1.4.7 [117] bit64_4.0.5
v1.7.0 - Aug 15th 2024¶
Dependencies of FuSViz, R session info
sessionInfo():R version 4.3.0 (2023-04-21) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Ventura 14.5 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0 locale: [1] C/UTF-8/C/C/C/C time zone: Europe/Oslo tzcode source: internal attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] FuSViz_1.7.0 loaded via a namespace (and not attached): [1] DBI_1.2.2 bitops_1.0-7 [3] deldir_2.0-4 gridExtra_2.3 [5] biomaRt_2.58.2 rlang_1.1.3 [7] magrittr_2.0.3 biovizBase_1.50.0 [9] matrixStats_1.3.0 compiler_4.3.0 [11] RSQLite_2.3.6 GenomicFeatures_1.54.4 [13] png_0.1-8 vctrs_0.6.5 [15] ProtGenerics_1.34.0 stringr_1.5.1 [17] pkgconfig_2.0.3 crayon_1.5.2 [19] fastmap_1.1.1 backports_1.4.1 [21] dbplyr_2.5.0 XVector_0.42.0 [23] utf8_1.2.4 Rsamtools_2.18.0 [25] rmarkdown_2.26 bit_4.0.5 [27] xfun_0.43 zlibbioc_1.48.2 [29] cachem_1.0.8 GenomeInfoDb_1.38.8 [31] jsonlite_1.8.8 progress_1.2.3 [33] blob_1.2.4 DelayedArray_0.28.0 [35] BiocParallel_1.36.0 jpeg_0.1-10 [37] parallel_4.3.0 prettyunits_1.2.0 [39] cluster_2.1.6 VariantAnnotation_1.48.1 [41] R6_2.5.1 stringi_1.8.3 [43] RColorBrewer_1.1-3 rtracklayer_1.62.0 [45] rpart_4.1.23 Gviz_1.46.1 [47] GenomicRanges_1.54.1 Rcpp_1.0.12 [49] SummarizedExperiment_1.32.0 knitr_1.45 [51] base64enc_0.1-3 IRanges_2.36.0 [53] Matrix_1.6-5 nnet_7.3-19 [55] tidyselect_1.2.1 dichromat_2.0-0.1 [57] rstudioapi_0.16.0 abind_1.4-5 [59] yaml_2.3.8 codetools_0.2-20 [61] curl_5.2.1 lattice_0.22-6 [63] tibble_3.2.1 Biobase_2.62.0 [65] KEGGREST_1.42.0 evaluate_0.23 [67] foreign_0.8-86 BiocFileCache_2.10.2 [69] xml2_1.3.6 Biostrings_2.70.3 [71] pillar_1.9.0 filelock_1.0.3 [73] MatrixGenerics_1.14.0 checkmate_2.3.1 [75] stats4_4.3.0 generics_0.1.3 [77] RCurl_1.98-1.14 ensembldb_2.26.0 [79] S4Vectors_0.40.2 hms_1.1.3 [81] ggplot2_3.5.0 munsell_0.5.1 [83] scales_1.3.0 glue_1.7.0 [85] lazyeval_0.2.2 Hmisc_5.1-2 [87] tools_4.3.0 interp_1.1-6 [89] BiocIO_1.12.0 data.table_1.15.4 [91] BSgenome_1.70.2 GenomicAlignments_1.38.2 [93] XML_3.99-0.16.1 latticeExtra_0.6-30 [95] AnnotationDbi_1.64.1 colorspace_2.1-0 [97] GenomeInfoDbData_1.2.11 htmlTable_2.4.2 [99] restfulr_0.0.15 Formula_1.2-5 [101] cli_3.6.2 rappdirs_0.3.3 [103] fansi_1.0.6 S4Arrays_1.2.1 [105] dplyr_1.1.4 AnnotationFilter_1.26.0 [107] gtable_0.3.4 digest_0.6.35 [109] BiocGenerics_0.48.1 SparseArray_1.2.4 [111] rjson_0.2.21 htmlwidgets_1.6.4 [113] memoise_2.0.1 htmltools_0.5.8.1 [115] lifecycle_1.0.4 httr_1.4.7 [117] bit64_4.0.5
v1.8.0 - Dec 16th 2024¶
Dependencies of FuSViz, R session info
sessionInfo():R version 4.4.2 (2024-10-31) Platform: x86_64-pc-linux-gnu Running under: Ubuntu 24.04.1 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C time zone: Etc/UTC tzcode source: system (glibc) attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] datamods_1.5.3 visNetwork_2.1.2 wordcloud2_0.2.2 [4] BioCircos_0.3.4 DT_0.33 FuSViz_1.8.0 [7] jsonlite_1.8.9 shinycssloaders_1.1.0 shinyWidgets_0.8.7 [10] shinydashboard_0.7.2 shiny_1.8.1.1 data.table_1.16.4 loaded via a namespace (and not attached): [1] later_1.4.1 BiocIO_1.16.0 [3] bitops_1.0-9 filelock_1.0.3 [5] tibble_3.2.1 cellranger_1.1.0 [7] XML_3.99-0.17 rpart_4.1.23 [9] lifecycle_1.0.4 httr2_1.0.7 [11] lattice_0.22-6 ensembldb_2.30.0 [13] crosstalk_1.2.1 backports_1.5.0 [15] magrittr_2.0.3 Hmisc_5.2-1 [17] sass_0.4.9 rmarkdown_2.29 [19] jquerylib_0.1.4 yaml_2.3.10 [21] httpuv_1.6.15 Gviz_1.50.0 [23] DBI_1.2.3 RColorBrewer_1.1-3 [25] abind_1.4-8 zlibbioc_1.52.0 [27] GenomicRanges_1.58.0 AnnotationFilter_1.30.0 [29] biovizBase_1.54.0 BiocGenerics_0.52.0 [31] RCurl_1.98-1.16 nnet_7.3-19 [33] VariantAnnotation_1.52.0 rappdirs_0.3.3 [35] reactable_0.4.4 GenomeInfoDbData_1.2.13 [37] IRanges_2.40.1 S4Vectors_0.44.0 [39] codetools_0.2-20 DelayedArray_0.32.0 [41] xml2_1.3.6 tidyselect_1.2.1 [43] UCSC.utils_1.2.0 matrixStats_1.4.1 [45] stats4_4.4.2 BiocFileCache_2.14.0 [47] base64enc_0.1-3 GenomicAlignments_1.42.0 [49] e1071_1.7-16 Formula_1.2-5 [51] tools_4.4.2 progress_1.2.3 [53] rio_1.2.3 phosphoricons_0.2.1 [55] Rcpp_1.0.13-1 glue_1.8.0 [57] gridExtra_2.3 SparseArray_1.6.0 [59] xfun_0.49 MatrixGenerics_1.18.0 [61] GenomeInfoDb_1.42.1 dplyr_1.1.4 [63] fastmap_1.2.0 latticeExtra_0.6-30 [65] fansi_1.0.6 digest_0.6.37 [67] toastui_0.3.4 R6_2.5.1 [69] mime_0.12 colorspace_2.1-1 [71] jpeg_0.1-10 dichromat_2.0-0.1 [73] biomaRt_2.62.0 RSQLite_2.3.9 [75] utf8_1.2.4 generics_0.1.3 [77] rtracklayer_1.66.0 class_7.3-22 [79] prettyunits_1.2.0 httr_1.4.7 [81] htmlwidgets_1.6.4 S4Arrays_1.6.0 [83] pkgconfig_2.0.3 gtable_0.3.6 [85] blob_1.2.4 XVector_0.46.0 [87] htmltools_0.5.8.1 ProtGenerics_1.38.0 [89] scales_1.3.0 Biobase_2.66.0 [91] png_0.1-8 knitr_1.49 [93] rstudioapi_0.17.1 rjson_0.2.23 [95] checkmate_2.3.2 curl_6.0.1 [97] proxy_0.4-27 cachem_1.1.0 [99] stringr_1.5.1 KernSmooth_2.23-24 [101] parallel_4.4.2 foreign_0.8-87 [103] AnnotationDbi_1.68.0 restfulr_0.0.15 [105] pillar_1.9.0 vctrs_0.6.5 [107] promises_1.3.2 dbplyr_2.5.0 [109] xtable_1.8-4 cluster_2.1.6 [111] htmlTable_2.4.3 evaluate_1.0.1 [113] GenomicFeatures_1.58.0 cli_3.6.3 [115] compiler_4.4.2 Rsamtools_2.22.0 [117] rlang_1.1.4 crayon_1.5.3 [119] interp_1.1-6 classInt_0.4-10 [121] plyr_1.8.9 writexl_1.5.1 [123] stringi_1.8.4 deldir_2.0-4 [125] BiocParallel_1.40.0 munsell_0.5.1 [127] Biostrings_2.74.0 lazyeval_0.2.2 [129] Matrix_1.7-1 BSgenome_1.74.0 [131] hms_1.1.3 bit64_4.5.2 [133] ggplot2_3.5.1 KEGGREST_1.46.0 [135] fontawesome_0.5.3 SummarizedExperiment_1.36.0 [137] memoise_2.0.1 bslib_0.8.0 [139] bit_4.5.0.1 readxl_1.4.3 [141] shinybusy_0.3.3